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Publications

Main Publications
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S. Tur, C.G.Palii & M. Brand. Cell Fate Decision in Erythropoiesis: Insights from Multi-Omics Studies. Experimental Hematology (2024) Jan 21:104167. doi: 10.1016/j.exphem.2024.104167.

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A. Benyoucef*, J.J. Haigh & M. Brand*. Unveiling the Complexity of Transcription Factor Networks in Hematopoietic Stem Cells: Implications for Cell Therapy and Hematological Malignancies. *Co-corresponding.  Frontiers in Oncology, Hematological Malignancies  (2023) Vol. 13. https://doi.org/10.3389/fonc.2023.1151343

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Q. Zhang & M. Brand. The Winding Road Towards Transcriptional Repression.  Molecular Cell (2023) 83(5):653-654

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M.M. Jung, S.S. Shen, G.A. Botten, T. Olender, K.R. Katsumura, K.D. Johnson, A.A. Soukup, P. Liu, Q.Zhang, Z.D. Jensvold, P.W. Lewis, R.A. Beagrie, J.K.K. Low, L. Yang, J.P. Mackay, L.A. Godley, M. Brand, J. Xu, S. Keles & E.H. Bresnick. Pathogenic Human Variant that Dislocates GATA2 Zinc Fingers Disrupts Hematopoietic Gene Expression and Signaling Networks. Journal of Clinical Investigation (2023) 133(7):e16268.

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M. Brand. Epigenetic Plasticity of Erythroid Progenitors. Blood (2021) 138(18): 1646-1648.

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D. Iskander, G. Wang, E.F. Heuston, C. Christodoulidou, B. Psaila, K. Ponnusamy, H. Ren, Z. Mokhtari, M. Robinson, A. Chaidos, P. Trivadi, N. Trasanidis, A. Katsarou, R. Szydlo, NISC Comparative Sequencing Program, C.G. Palii, M. Ziadi, Q. Al-Oqaily, V. Caputo, A. Roy, Y. Harrington, L. Karnik, K. Naresh, A.J. Mead, S. Thongjuea, M. Brand, J. de la Fuente, D.M. Bodine, I. Roberts & A. Karadimitris. Single-Cell Profiling of Human Bone Marrow Progenitors reveals Mechanisms of Failing Erythropoiesis in Diamond-Blackfan Anemia. Science Translational Medicine (2021) 13(610): eabf0113.

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Y. Li, K. Nakka, T. Olender, P. Gingras-Gelinas, M.K. Wong, D.C.L. Robinson, H. Bandukwala, O. Neyret, M. Brand, A. Blais & F.J. Dilworth. Chromatin and Transcription Factor Profiling in Rare Stem Cell Populations using CUT&Tag. STAR Protocols (2021) 2(3): 100751.

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M. Brand & J.A. Ranish. Proteomic / Transcriptomic Analysis of Erythropoiesis.  Current Opinion in Hematology (2021) 28(3): 150-157.

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M.A. Gillespie, C.G. Palii, D. Sanchez-Taltavull, T.J. Perkins, M. Brand & J.A. Ranish. Absolute Quantification of Transcription Factors in Human Erythropoiesis using Selected Reaction Monitoring Mass Spectrometry.  STAR Protocols (2020) 1(3): 100216.

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C. Scott, D.J. Downes, J.M. Brown, R. Beagrie, A-A. Olijnik, M. Gosden, R. Schwessinger, C.A. Fisher, A. Rose, D.J.P. Ferguson, E. Johnson, Q.A. Hill, S. Okoli, R. Renella, K. Ryan, M. Brand, J. Hughes, N.B.A. Roy, D.R. Higgs, C. Babbs & V.J. Buckle.  Recapitulation of Erythropoiesis in Congenital Dyserythropoietic Anaemia Type I (CDA-I) Identifies Defects in Differentiation and Nucleolar Abnormalities.  Haematologica (2020), https://doi.org/10.3324/haematol.2020.260158

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A. Gurumurthy, Q. Wu, R. Nar, K. Paulsen, A. Trumbull, R.C. Fishman, M. Brand, J. Strouboulis, Z. Qian & J. Bungert.  Lineage TFII-I/Gtf2i and Erythro-Megakaryopoiesis.  Frontiers in Physiology (2020), https://doi.org/10.3389/fphys.2020.590180

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S. Loughran*1, S. Haas*, A.C. Wilkinson*, A. Klein** & M. Brand**.  Lineage Commitment of Hematopoietic Stem Cells and Progenitors: Insights from Recent Single Cell and Lineage Tracing Technologies. *co-first, **co-last, 1corresponding  Experimental Hematology (2020), 88:1-6.

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M. Brand* & E. Morrissey*.  Single-cell Fate Decisions of Bipotential Hematopoietic Progenitors. *co-corresponding  Current Opinion in Hematology (2020), 27(4): 232-240

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 M.A. Gillespie*, C.G. Palii*, D. Sanchez-Taltavull*, P. Shannon, W.J.R. Longabaugh, D.J. Downes, K. Sivaraman, H.M. Espinoza, J.R. Hughes, N.D. Price, T.J. Perkins**, J.A. Ranish** & M. Brand**.  Absolute Quantification of Transcription Factors Reveal Principles of Gene Regulation in Erythropoiesis. *co-first **co-senior  Molecular Cell (2020), https://doi.org/10.1016/j.molcel.2020.03.03.031

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The Human Erythropoiesis Transcription Factors Website

The Gene Regulatory Network of Erythroid Commitment

 
 
Y. Li*, Z. Liao*, H. Luo, A. Benyoucef, Y. Kang, Q. Lai, S. Dovat, B. Miller, I. Chepelev, Y. Li, K. Zhao, M. Brand & S. Huang.  Alteration of CTCF-associated Chromatin Neighborhood Inhibits TAL1-driven Oncogenic Transcription Program and Leukemogenesis.  *co-first  Nucleic Acids Research (2020), 48(6): 3119-3133

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M. Brand*, K. Nakka, J. Zhu & F.J. Dilworth*.  Polycomb/Trithorax Antagonism: Cellular Memory in Stem Cell Fate and Function. *co-corresponding  Cell Stem Cell (2019), 24(4): 518-533

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C.G. Palii*, Q. Cheng*, M.A. Gillespie, P. Shannon, M. Mazurczyk, G. Napolitani, N.D. Price, J.A. Ranish, E. Morrissey**, D.R. Higgs** & M. Brand**.  Single cell proteomics reveal that quantitative changes in co-expressed lineage-specific transcription factors determine cell-fate. *co-first **co-senior  Cell Stem Cell (2019), https://doi.org/10.1016/j.stem.2019.02.006 (Featured Article)

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C.G. Palii*, Q. Cheng*, M.A. Gillespie, M. Mazurczyk, G. Napolitani, J.A. Ranish, E. Morrissey**, D.R. Higgs** & M. Brand** .  Single cell proteomics reveal that temporal changes in transcription factors determine cell-fate.  *co-first   **co-senior  (Pre-print posted on Nov 2, 2018)
 

 
R. Rao, A. Ketkar, N. Kedia, V. Krishnamoorthy, V. Lakshmanan, P. Kumar, A. Mohanty, S.O. Raja, S.D. Kumar, A. Gulyani, C-P. Chaturvedi, M. Brand, D. Palakodeti & S. Rampalli.  KMT1 family methyltransferases regulate heterochromatin-nuclear periphery tethering via histone and non-histone protein methylation.  EMBO Reports, e4326, 2019

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Ketkar, R.A. Rao, N. Kedia, F. Ravindran, V. Lakshmanan, P. Kumar, A. Mohanty, S.D. Kumar, S.O. Raja, A. Gulyani, C-P. Chaturvedi, M. Brand, D. Palakodeti & S. Rampalli.  Euchromatic histone methyltransferases regulate peripheral heterochromatin tethering via histone and non-histone protein methylations.  (Pre-print posted on BioRxiv on Jan 2, 2018)
 

 
J.F. Haddad*, Y. Yang*, Y. Takahashi, M. Joshi, N. Chaudhary, A.R. Woodfin, A. Benyoucef, S. Yeung, J.S. Brunzelle, G. Skiniotis, M. Brand, A. Shilatifard & J-F. Couture. Structural analysis of the Ash2L/Dpy-30 complex reveals a heterogeneity in H3K4 methylation.  *co-first  Structure, 26:1-10 https://doi.org/10.1016/j.str.2018.08.004, 2018

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S. Fraineau, C.G Palii, B. McNeill, M. Ritso, W.C. Shelley, N. Prasain, A. Chu, E. Vion, K. Rieck, S. Nilufar, T.J. Perkins, M.A. Rudnicki, D.S. Allan, M.C. Yoder, E.J. Suuronen & M. Brand.   Epigenetic Activation of Pro-angiogenic Signaling Pathways in Human Endothelial Progenitors Increases Vasculogenesis.   Stem Cell Reports, 9(5): 1573-1587, 2017

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A. Benyoucef, C.G. Palii, C. Wang, C.J. Porter, A. Chu, F. Dai, V. Tremblay, P. Rakopoulos, K. Singh, S. Huang, F. Pflumio, J. Hebert, J-F. Couture, T.J. Perkins, K. Ge, F.J. Dilworth & M. Brand.  UTX inhibition as a selective epigenetic therapy against TAL1-driven T-cell Acute Lymphoblastic Leukemia .   Genes & Development, 30(5): 508-521, 2016 (Page Cover)

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Supplementary Table 1

Supplementary Table 2

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M. Brand.   Pharmacologic Control of Chromatin Looping.   Blood, 126(5): 569-570, 2015

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G.A Blobel, D. Bodine, M. Brand,  J. Crispino, M.F.T.R de Bruijn, D. Nathan, T. Pappayannopoulou, C. Porcher, J. Strouboulis, L. Zon, D.R. Higgs, G. Stamatoyannopoulos & J.D. Engel.  An International Effort to Cure a Global Health Problem: A report on the 19th Hemoglobin Switching ConferenceExperimental Hematology, 43(10): 821-837, 2015

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A. Benyoucef & M. Brand.  Epigenetic Gene Regulation and Stem Cell Function.  Translational Epigenetics Series, Epigenetic Gene Expression and Regulation, 7: 149-181, 2015

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S. Fraineau, C.G. Palii, D.S. Allan & M. Brand.  Epigenetic Regulation of Endothelial Cell-mediated Vascular Repair.   FEBS Journal, 282(9): 1605-1629, 2015 (Page Cover)

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P. Zhang, C.P. Chaturvedi, V. Tremblay, M. Cramet, J.S. Brunzelle, G. Skiniotis, M. Brand, A. Shilatifard & J.F. Couture.  A phosphorylation Switch on RbBP5 regulates Histone H3 Lys4 Methylation.   Genes and Development, 29: 123-128, 2015

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C.G. Palii, B. Vulesevic, S. Fraineau, E. Pranckeviciene, A.J. Griffith, A. Chu, H. Faralli, Y. Li, B. McNeill, J. Sun, T.J. Perkins, F.J. Dilworth, C. Perez-Iratxeta, E.J. Suuronen, D.S. Allan & M. Brand Trichostatin A enhances vascular repair by injected human endothelial progenitors through increasing the expression of TAL1-dependent genes.    Cell Stem Cell, 14(5): 644-657, 2014 (Featured article)

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C-P. Chaturvedi & M. Brand.  EHMT2 (euchromatic histone-lysine N-methyltransferase 2)  Atlas of Genetics and Cytogenetics in Oncology and Haematology 18(1): 38-45, 2014

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V. Tremblay, P. Zhang, C.P. Chaturvedi, J. Thornton, J.S. Brunzelle, G. Skiniotis, A. Shilatifard, M. Brand & J.F. Couture.  Molecular Basis for DPY-30 Association to COMPASS-like and NURF Complexes.   Structure, 22(12): 1821-1830, 2014

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 M.R. Mansour, T. Sanda, L.N. Lawton, X. Li, T. Kreslavsky, C.D. Novina, M. Brand, A. Gutierrez, M.A. Kelliher, C.H. Jamieson, H. von Boehmer, R.A. Young & A.T. Look.  The TAL1 complex targets the FBXW7 tumor suppressor by activating miR-223 in human T cell acute lymphoblastic leukemia Journal of Experimental Medicine 210(8): 1545-1557, 2013

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C-P. Chaturvedi, B. Somasundaram, K.Singh, R.L. Carpenedo, W.L. Stanford, F.J. Dilworth & M. Brand. Maintenance of gene silencing by the coordinate action of the H3K9 methyltransferase G9a/KMT1C and the H3K4 demethylase Jarid1a/KDM5A. Proceedings of the National Academy of Sciences USA, 109(46): 18845-18850, 2012

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Y. Li, C. Deng, X. Hu, X. Fu, Y. Qiu, M. Brand, K. Zhao & S. Huang.  Dynamic interaction between TAL1 and LSD1 regulates TAL1 function in hematopoiesis and leukemogenesis. Oncogene, Epub ahead of print February 6, 2012

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L. Guevel, J.R. Lavoie, C. Perez-Iratxeta, K. Rouger, L. Dubreil, M. Feron, S. Talon M. Brand* & L. Megeney*. Quantitative proteomic analysis of dystrophic dog muscle. Journal of Proteome Research 10 (5): 2465-2478, 2011
*share equal contribution as senior authors

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C.G. Palii*, C. Perez-Iratxeta*, Z. Yao, Y. Cao, F. Dai, J. Davison, H. Atkins, D. Allan, F.J. Dilworth, R. Gentleman, S.J. Tapscott & M. Brand. Differential genomic targeting of the transcription factor TAL1 in alternate hematopoietic lineages. The EMBO Journal  30 (3): 494-509, 2011 (Epub Dec 21, 2010)
*equal contribution

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Supplementary Tables

 
 
C.G. Palii, R. Pasha & M. Brand. Lentiviral-mediated knockdown during ex vivo erythropoiesis of human hematopoietic stem cells. Journal of Visualized Experiments  doi: 10.3791/2813. J Vis Exp. 53, 2011

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S. Sarvan*, V. Avdic*, V. Tremblay*, C-P. Chaturvedi, P. Zhang, S. Lanouette, A. Blais, J.S. Brunzelle, M. Brand & J-F. Couture. Crystal structure of the trithorax group protein ASH2L reveals a forkhead-like DNA binding domain. Nature Structural and Molecular Biology18 (7): 857-859, 2011
* equal contribution

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A.M. Hosey, C-P Chaturvedi & M. Brand. Crosstalk between histone modifications maintains the developmental pattern of gene expression on a tissue-specific locus.
Epigenetics 5 (4):273-281, 2010

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C-P. Chaturvedi*, A.M. Hosey*, C. Palii, C. Perez-Iratxeta, Y. Nakatani, J.A. Ranish, F.J. Dilworth & M. Brand. Dual role for the methyltransferase G9a in the maintenance of ß-globin gene transcription in adult erythroid cells. Proceedings of the National Academy of Sciences USA, 106 (43): 18303-18308, 2009
*equal contribution

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A.M. Hosey & M. Brand. Chromatin-mediated spreading on active genes. Nature Structural and Molecular Biology 16 (1): 11-13, 2009

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M. Brand, S. Rampalli, C-P. Chaturvedi, and F.J. Dilworth. Analysis of epigenetic modifications of chromatin at specific gene loci by native chromatin immunoprecipitation (N-ChIP) of nucleosomes isolated using hydroxyapatite chromatography. Nature Protocols 3 (3): 398-409, 2008

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C. Demers, C.P. Chaturvedi, J. A. Ranish, G. Juban, P. Lai, F. Morle, R. Aebersold, F. Dilworth, M. Groudine and M. Brand. Activator-mediated Recruitment of the MLL2 Methyltransferase Complex to the ß-globin Locus.  Molecular Cell, 27: 573-584, 2007

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J.A Ranish, M. Brand and R. Aebersold. Using stable isotope tagging and MS to characterize protein complexes and to detect changes in their composition. Methods Mol Biol. 359:17-35, 2007

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A. Kim, S. Song, M. Brand and A. Dean. Nucleosome and transcription activator antagonism at human ß-globin locus control region DNase I hypersensitive sites. Nucleic Acids Research 35 (17): 5831-5838, 2007

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M. Brand, J. A. Ranish, N. T. Kummer, J. Hamilton, K. Igarashi, C. Francastel, T. Chi, G. R. Crabtree, R. Aebersold and M. Groudine. Dynamic changes in transcription factors complexes during erythroid differentiation revealed by quantitative proteomics. Nature Structural and Molecular Biology, 11 (1): 73-80, 2004

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J. Sun, M. Brand, Y. Zenke, S. Tashiro, M. Groudine and K. Igarashi. Heme regulates dynamics of Bach1 and NF-E2-related factors in the Maf transcription factor network. Proceedings of the National Academy of Sciences, 101 (6): 1461-1466, 2004

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N. Cavusoglu,  M. Brand, L. Tora and A. Van Dorsselaer. Novel subunits of the TATA Binding Protein Free TAFII-containing transcription complex identified by matrix-assisted laser desorption/ionization-time of flight mass spectrometry following one dimensional gel electrophoresis. Proteomics, 3 (2): 217-223, 2003

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S. Hardy*, M. Brand*, G. Mittler, J. Yanagisawa, S. Kato, M. Meisterernst and L. Tora. TATA-binding protein-Free TAF-containing complex (TFTC) and p300 are both required for efficient transcriptional activation. Journal of Biological Chemistry 277: 32875-32882, 2002
*equal contribution

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M. Brand, J. G. Moggs, M. Oulad-Abdelghani, F. Lejeune, F. J. Dilworth, J. Stevenin, G. Almouzni and L. Tora. UV-damaged DNA binding protein in the TFTC complex links DNA damage recognition to nucleosome acetylation. The EMBO Journal 20 (12): 3187-3196, 2001

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M. Brand*, C. Leurent*, V. Mallouh, L. Tora and P. Schultz. Three dimensional structures of the TAFII-containing complexes TFIID and TFTC. Science 286: 2151-2153, 1999
*equal contribution

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M. Brand, K. Yamamoto, A. Staub and L.Tora. Identification of TFTC subunits suggests a role in nucleosome acetylation and signal transduction. Journal of Biological Chemistry 274 (26): 18285-18289, 1999

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L. Tora, M. Brand, E. Wieczorek and D. Metzger. The role of TAFII30-containing complexes in vertebrate gene regulation. in: Human Frontier Workshop VII on "Transcription Regulation in Eukaryotes" Eds. P. Chambon, R.D. Kornberg, T. Fukasawa and C. Coath. HFSP, Strasbourg, France. pp. 162-170, 1999

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E. Wieczorek*, M. Brand*, X. Jacq and L. Tora. Function of TAFII-containing complex without TBP in transcription by RNA polymerase II. Nature  393: 187-191, 1998
*equal contribution

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Other Publications

 
 
S. McLaughlin, V. Sedlakova, Q. Zhang, B. McNeill, D. Smyth, R. Seymour, D.R. Davis, M. Ruel, M. Brand, E.I. Alarcon & E.J. Suuronen. Recpmbinant Human Collagen Hydrogel Rapidly Reduces Methlglyoxal Adducts within Cardiomyocytes Improves Borderzone Contractility after Myocardial Infarction in Mice. Advanced Functional Materials (2022), https://doi.org/10.1002/adfm.202204076

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K. Nakka, S. Hachmer, Z. Mokhtari, R. Kovac, H. Bandukwala, C. Bernard, Y. Li, G. Xie, C. Liu, M. Fallahi, L.A. Megeney, J. Gondin, B. Chazaud, M. Brand, X. Zha, K. Ge & F.J. Dilworth. JMJD3 activated hyaluronan synthesis drives muscle regeneration in an inflammatory environment. Science (2022), 377(6606):

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D.C.L. Robinson, M. Ritso, G.M. Nelson, Z. Mokhtari, K. Nakka, H. Bandukwala, S.R. Goldman, P.J. Park, R. Mounier, B. Chazaud, M. Brand, M.A. Rudnicki, K. Adelman & F.J. Dilworth. Negative Elongation Factor (NELF) Regulates Muscle Progenitor Expansion for Efficient Myofiber Repair and Stem Cell Pool Repopulation.  Developmental Cell (2021), 56(7):

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T. Q-T. Do, A. Gaudreau-Lapierre, C.G. Palii, V. M. Ferreira Resende, D. Campuzano, C.S. Aeschimann, M. Brand & L. Trinckle-Mulcahy. A Nuclear Stress Pathway that Parallels Cytoplasmic Stress Granule Formation.  iScience, 23(11):

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S.Han, D.J. Dennis, A. Balakrishnan, R. Dixit, O. Britz, D. Zinyk, Y. Touahri, T. Olender, M. Brand, F. Guillemot, D. Kurrasch & C. Schuurmans. A non-canonical role for the proneural gene Neurog1 as a negative regulator of neocortical neurogenesis.  Development, 145(19):

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J. Barrera-Ramirez, J.R. Lavoie, H.B. Maganti, W.L. Stanford, C. Ito, M. Sabloff, M. Brand, M. Rosu-Myles, Y. Le & D. Allan. Micro RNA profiling of exosomes from marrow-derived mesenchymal stromal cells in patients with acute myeloid leukemia: implications in leukemogenesis. Stem Cell Reviews and Reports, 13(6): 817-825, https://doi.org/10.1007/s12015-017-9762-0, 2017

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H. Faralli, C. Wang, A.K. Nakka, A. Benyoucef, S. Sebastian, L. Zhuang, A. Chu, C., C.G. Palii, C. Liu, B. Camellato, M. Brand, K. Ge & F.J. Dilworth.  H3K27-demethylase activity of UTX/KDM6A is essential for skeletal muscle regeneration.   Journal of Clinical Investigation, 126(4): 1555-1565, 2016

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Y. Le, S. Fraineau, P. Chandran, M. Sabloff, M. Brand, J.R. Lavoie, R. Gagne, M. Rosu-Myles, C.L. Yauk, R.B. Richardson & D.S. Allan. Adipogenic Mesenchymal Stromal Cells from Bone Marrow and their Hematopoietic Supportive Role: Towards an Understanding of a Permissive Marrow Microenvironment in Acute Myeloid Leukemia. Stem Cell Reviews and Reports. Epub ahead of print. Dec 9, 2015

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M. Andrade-Navarro, F. Kanji, C.G. Palii, M. Brand, H. Atkins & C. Perez-Iratxeta. A method for cell type marker discovery by high-throughput gene expression analysis of mixed cell populations.    BMC Biotechnology, 13: 80, 2013

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S. Sebastian, H. Faralli, Z. Yao, P. Rakopoulos, C. Palii, Y. Cao, K. Singh, Q-C. Liu, A. Chu, A. Aziz, M. Brand, S.J. Tapscott & F.J. Dilworth.  Tissue-specific splicing of a ubiquitously expressed transcription factor is essential for muscle differentiation Genes & Development 27: 1247-1259, 2013

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S. Li, P. Mattar, D. Zinyk, K. Singh, C-P. Chaturvedi, C. Kovach, R. Dixit, D.M. Kurrasch, Y. Ma, J.A. Chan, V. Wallace, F.J. Dilworth, M. Brand & C. Schuurmans .  GSK3 temporally regulates Neurogenin 2 proneural activity in the neocortex. Journal of Neuroscience 32 (23): 7791-7805, 2012

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  L. Labonté, Y. Li, C.L. Addison, M. Brand, H. Javidnia, M. Corsten, K. Burns & D.S. Allan .  Distinct profile of vascular progenitor attachment to extracellular matrix proteins in cancer patients. Clinical and Investigative Medicine 35 (2): E86-95, 2012

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S. Rampalli, L. Li, E. Mak, K. Ge, M. Brand, S.J. Tapscott, and F.J. Dilworth. p38 MAPK signaling pathway regulates recruitment of Ash2L-containing methyltransferase complexes to specific genes during differentiation. Nature Structural and Molecular Biology 14: 1150-1156, 2007

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Y. G. Gangloff, J. C. Pointud, S. Thuault, L. Carre, C. Romier, S. Muratoglu, M. Brand, L. Tora, J. L. Couderc and I. Davidson. The TFIID components human TAF(II)140 and Drosophila BIP2 (TAF(II)155) are novel metazoan homologues of yeast TAF(II)47 containing a histone fold and a PHD finger. Molecular and Cellular Biology 21 (15): 5109-51021, 2001

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